PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA12g22470
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family bHLH
Protein Properties Length: 352aa    MW: 39092.4 Da    PI: 6.005
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA12g22470genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH345.5e-11220265655
                 HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 +++Er RR ri +++ +L+el+P+     +k  + a++L  A +YIk+L+
  CA12g22470 220 SIAERVRRTRISERMRKLQELVPNM----DKQTNTADMLDFAADYIKELE 265
                 689*********************7....688***************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.5214264IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.68E-15217275IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.82E-11218269No hitNo description
Gene3DG3DSA:4.10.280.101.7E-13219275IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.5E-8220265IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-11220270IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MDSFCRYLDS VDTNRFNQTE MDGGFGVGTS NSNLTRYNSS PAGFFAQVNI ENEYGALRGI  60
GSYGTVSGSN AAAEQASFSN PSRFSSQKSG QPNSSGLLAP ISELGAKSIE ESRQSDEGFG  120
KGHKNDESYM TGFPMPSWDD SQILTDDYLQ VPEDDEAGPF TNVNASDNQS SEGRACPPTL  180
LSHLSLPQTS AELSAMEKLL EDSVPCKVRA KRGCATHPRS IAERVRRTRI SERMRKLQEL  240
VPNMDKQTNT ADMLDFAADY IKELETQVKV YPKRNHNEPM LLGHFKNINW CLLIQHECCN  300
IFGESEQHSN VQHKRILSIH ISRVNTYNDY IFLNCSQALS ETRSKCTCSH K*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2127925e-73AC212792.2 Solanum lycopersicum DNA sequence from clone LE_HBa-224N6 on chromosome 12, complete sequence.
GenBankHG9754515e-73HG975451.1 Solanum pennellii chromosome ch12, complete genome.
GenBankHG9755245e-73HG975524.1 Solanum lycopersicum chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016550196.10.0PREDICTED: transcription factor bHLH122-like
RefseqXP_016550195.10.0PREDICTED: transcription factor bHLH122-like
RefseqXP_016550194.10.0PREDICTED: transcription factor bHLH122-like
RefseqXP_016550193.10.0PREDICTED: transcription factor bHLH122-like
RefseqXP_016550192.10.0PREDICTED: transcription factor bHLH122-like
RefseqXP_016550191.10.0PREDICTED: transcription factor bHLH122-like
TrEMBLM1C7B40.0M1C7B4_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000612840.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA46052239
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51140.12e-52bHLH family protein